Infernal 1.1.2 release notes http://eddylab.org/infernal/ EPN, Fri Jul 1 16:28:48 2016 ________________________________________________________________ Infernal 1.1.2 is the second update release for Infernal 1.1. Notable changes from 1.1.1: - cmscan is significantly improved, and can now be used for genome annotation; enhancements include: o speed improvements due to storage of models in memory instead of rereading from disk for each query sequence o overlapping hits are annotated in tabular output files with the --tblout --fmt 2 option combination o clan membership (a la Rfam) is annotated in tabular output files with the --tblout --fmt 2 --clanin option combination. o there is no longer a maximum query sequence length - the Easel and HMMER3 libraries which are included with Infernal have undergone numerous bug fixes and improvements. - Fixed bug #i44, which caused a problem with the cmalign --mapstr option if only one half of a base pair in the input alignment structure was modelled by a consensus position (and the other was modelled as an insert). ________________________________________________________________ For more information, see http://eddylab.org/infernal/