Serialized Form
atvappletframe
forester.atv.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
treefile
java.io.File treefile
jmenubar
javax.swing.JMenuBar jmenubar
file_jmenu
javax.swing.JMenu file_jmenu
edit_jmenu
javax.swing.JMenu edit_jmenu
view_jmenu
javax.swing.JMenu view_jmenu
options_jmenu
javax.swing.JMenu options_jmenu
help_jmenu
javax.swing.JMenu help_jmenu
print_size_jmenu
javax.swing.JMenu print_size_jmenu
open_item
javax.swing.JMenuItem open_item
open_url_item
javax.swing.JMenuItem open_url_item
save_item
javax.swing.JMenuItem save_item
saveas_item
javax.swing.JMenuItem saveas_item
print_item
javax.swing.JMenuItem print_item
close_item
javax.swing.JMenuItem close_item
exit_item
javax.swing.JMenuItem exit_item
remove_root_item
javax.swing.JMenuItem remove_root_item
remove_root_tri_item
javax.swing.JMenuItem remove_root_tri_item
tiny_fonts_item
javax.swing.JMenuItem tiny_fonts_item
small_fonts_item
javax.swing.JMenuItem small_fonts_item
medium_fonts_item
javax.swing.JMenuItem medium_fonts_item
large_fonts_item
javax.swing.JMenuItem large_fonts_item
switch_colors_item
javax.swing.JMenuItem switch_colors_item
view_as_NH_item
javax.swing.JMenuItem view_as_NH_item
view_as_NHX_item
javax.swing.JMenuItem view_as_NHX_item
about_item
javax.swing.JMenuItem about_item
help_item
javax.swing.JMenuItem help_item
atvpanel
forester.atv.ATVpanel atvpanel
contentpane
java.awt.Container contentpane
atvtextframe
forester.atv.ATVtextframe atvtextframe
open_jfilechooser
javax.swing.JFileChooser open_jfilechooser
saveas_jfilechooser
javax.swing.JFileChooser saveas_jfilechooser
x_slider
javax.swing.JSlider x_slider
y_slider
javax.swing.JSlider y_slider
xs_label
javax.swing.JLabel xs_label
ys_label
javax.swing.JLabel ys_label
print_in_color
javax.swing.JCheckBox print_in_color
atvappletframe
forester.atv_awt.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
atvappletWjsframe
forester.atv_awt.ATVappletWjsFrame atvappletWjsframe
js_getFileName
java.lang.String js_getFileName
js_setFileName
java.lang.String js_setFileName
js_printHook
java.lang.String js_printHook
js_saveFile
java.lang.String js_saveFile
treefile
java.io.File treefile
menubar
java.awt.MenuBar menubar
file_jmenu
java.awt.Menu file_jmenu
edit_jmenu
java.awt.Menu edit_jmenu
view_jmenu
java.awt.Menu view_jmenu
options_jmenu
java.awt.Menu options_jmenu
help_jmenu
java.awt.Menu help_jmenu
open_item
java.awt.MenuItem open_item
open_url_item
java.awt.MenuItem open_url_item
save_item
java.awt.MenuItem save_item
saveas_item
java.awt.MenuItem saveas_item
print_item
java.awt.MenuItem print_item
close_item
java.awt.MenuItem close_item
exit_item
java.awt.MenuItem exit_item
remove_root_item
java.awt.MenuItem remove_root_item
remove_root_tri_item
java.awt.MenuItem remove_root_tri_item
tiny_fonts_item
java.awt.MenuItem tiny_fonts_item
small_fonts_item
java.awt.MenuItem small_fonts_item
medium_fonts_item
java.awt.MenuItem medium_fonts_item
large_fonts_item
java.awt.MenuItem large_fonts_item
switch_colors_item
java.awt.MenuItem switch_colors_item
view_as_NH_item
java.awt.MenuItem view_as_NH_item
view_as_NHX_item
java.awt.MenuItem view_as_NHX_item
about_item
java.awt.MenuItem about_item
help_item
java.awt.MenuItem help_item
atvpanel
forester.atv_awt.ATVpanel atvpanel
contentpane
java.awt.Container contentpane
d
java.awt.Dialog d
url_tf
java.awt.TextField url_tf
url_string
java.lang.String url_string
tf
java.awt.TextField tf
tfLabel
java.awt.Label tfLabel
win
netscape.javascript.JSObject win
setFile
java.lang.String setFile
saveFile
java.lang.String saveFile
parent
java.awt.Frame parent
apply
java.awt.Button apply
close
java.awt.Button close
status
java.awt.Label status
gb
java.awt.GridBagLayout gb
gbc
java.awt.GridBagConstraints gbc
id
int id
taxo_id
int taxo_id
bootstrap
int bootstrap
sum_ext_nodes
int sum_ext_nodes
indicator
int indicator
x
int x
y
int y
duplication
boolean duplication
seq_name
java.lang.String seq_name
ec_number
java.lang.String ec_number
species
java.lang.String species
orig_seq_name
java.lang.String orig_seq_name
distance_parent
double distance_parent
lnL_on_parent_branch
double lnL_on_parent_branch
lnL_on_parent_branch_assigned
boolean lnL_on_parent_branch_assigned
significantly_worse
boolean significantly_worse
bl_of_seq_on_parent_branch
double bl_of_seq_on_parent_branch
duplication_or_spec_assigned
boolean duplication_or_spec_assigned
collapse
boolean collapse
next_ext_node
Node next_ext_node
prev_ext_node
Node prev_ext_node
child1
Node child1
child2
Node child2
parent
Node parent
link
Node link
vector
java.util.Vector vector
ext_node0
Node ext_node0
root
Node root
highest_lnL
double highest_lnL
lowest_lnL
double lowest_lnL
longest_distance
double longest_distance
number_of_branches
int number_of_branches
external_nodes
int external_nodes
number_of_duplications
int number_of_duplications
most_branches_per_ext_node
int most_branches_per_ext_node
rooted
boolean rooted
more_than_bin_nodes_in_NH
boolean more_than_bin_nodes_in_NH
name
java.lang.String name
idhash
java.util.Hashtable idhash
j
int j
atvappletframe
forester.atv_awt.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
atvappletframe
forester.atv.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception