|
forester v1.3 | |||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||
SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object | +--forester.tools.SDI | +--forester.tools.SDIse
Constructor Summary | |
SDIse(Tree gene_tree,
Tree species_tree)
Constructor. |
Method Summary | |
int |
infer(boolean strip_species_tree)
Infers for each Node of gene_tree whether it represents a speciation or duplication event. |
Methods inherited from class forester.tools.SDI |
main, stripTree |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public SDIse(Tree gene_tree, Tree species_tree) throws java.lang.Exception
gene_tree
- reference to a rooted binary gene Tree to which assign
duplication vs. speciationspecies_tree
- reference to a rooted binary species Tree which might
be stripped in the processMethod Detail |
public int infer(boolean strip_species_tree) throws java.lang.Exception
infer
in class SDI
strip_species_tree
- set to true to remove from the species tree
species not found in the gene tree
|
forester v1.3 | |||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||
SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |