Class Summary |
DistanceCalculator |
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DoRIO |
|
Int |
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NameAndValues |
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OE |
Implements Oliver Eulenstein's algorithm for speciation - duplication inference. |
RIO |
|
RIOdirectory |
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SDI |
Abstract class from with classes SDIse and OE inherit. |
SDIdirectory |
Allows to infer duplications - speciations on all (rooted or unrooted) gene trees in
a directory by using method "infer" of class SDIunrooted. |
SDIse |
Implements our algorithm for speciation - duplication inference (SDI). |
SDIunrooted |
Allows to infer duplications - speciations on a unrooted gene tree. |
transfersBranchLenghts |
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