GBPRI1.SEQ Genetic Sequence Data Bank 15 August 2000 NCBI-GenBank Flat File Release 119.0 Primate Sequences (Part 1) 6395 loci, 170956138 bases, from 6395 reported sequences LOCUS AAB2MCG1 289 bp DNA PRI 06-JUL-1998 DEFINITION Aotus azarai beta-2-microglobulin precursor, gene, exon 1. ACCESSION AF032092 VERSION AF032092.1 GI:3265027 KEYWORDS . SEGMENT 1 of 2 SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 289) AUTHORS Canavez,F.C., Ladasky,J.J., Muniz,J.A.C., Seuanez,H.N., Parham,P. and Cavanez,F.C. TITLE beta2-Microglobulin in neotropical primates (Platyrrhini) JOURNAL Immunogenetics 48 (2), 133-140 (1998) MEDLINE 98298008 REFERENCE 2 (bases 1 to 289) AUTHORS Canavez,F.C., Ladasky,J.J., Seuanez,H.N. and Parham,P. TITLE Direct Submission JOURNAL Submitted (31-OCT-1997) Structural Biology, Stanford University, Fairchild Building Campus West Dr. Room D-100, Stanford, CA 94305-5126, USA FEATURES Location/Qualifiers source 1..289 /organism="Aotus azarai" /db_xref="taxon:30591" exon <134..200 /number=1 sig_peptide 134..193 intron 201..>289 /number=1 BASE COUNT 30 a 99 c 80 g 80 t ORIGIN 1 gtccccgcgg gccttgtcct gattggctgt ccctgcgggc cttgtcctga ttggctgtgc 61 ccgactccgt ataacataaa tagaggcgtc gagtcgcgcg ggcattactg cagcggacta 121 cacttgggtc gagatggctc gcttcgtggt ggtggccctg ctcgtgctac tctctctgtc 181 tggcctggag gctatccagc gtaagtctct cctcccgtcc ggcgctggtc cttcccctcc 241 cgctcccacc ctctgtagcc gtctctgtgc tctctggttt cgttacctc // LOCUS AAB2MCG2 1276 bp DNA PRI 06-JUL-1998 DEFINITION Aotus azarai beta-2-microglobulin precursor, gene, exons 2 and 3 and complete cds. ACCESSION AF032093 AF032094 VERSION AF032093.1 GI:3287308 KEYWORDS . SEGMENT 2 of 2 SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 1276) AUTHORS Canavez,F.C., Ladasky,J.J., Muniz,J.A.C., Seuanez,H.N., Parham,P. and Cavanez,F.C. TITLE beta2-Microglobulin in neotropical primates (Platyrrhini) JOURNAL Immunogenetics 48 (2), 133-140 (1998) MEDLINE 98298008 REFERENCE 2 (bases 1 to 1276) AUTHORS Canavez,F.C., Ladasky,J.J., Seuanez,H.N. and Parham,P. TITLE Direct Submission JOURNAL Submitted (31-OCT-1997) Structural Biology, Stanford University, Fairchild Building Campus West Dr. Room D-100, Stanford, CA 94305-5126, USA COMMENT On Jul 2, 1998 this sequence version replaced gi:3265029 gi:3265028. FEATURES Location/Qualifiers source 1..1276 /organism="Aotus azarai" /db_xref="taxon:30591" mRNA join(AF032092.1:<134..200,66..344,1023..>1050) /product="beta-2-microglobulin precursor" CDS join(AF032092.1:134..200,66..344,1023..1036) /codon_start=1 /product="beta-2-microglobulin precursor" /protein_id="AAC52107.1" /db_xref="GI:3289965" /translation="MARFVVVALLVLLSLSGLEAIQRXPKIQVYSRHPAENGKPNFLN CYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYACRV SHVTLSTPKTVKWDRNM" mat_peptide join(AF032092.1:194..200,66..344,1023..1033) /product="beta-2-microglobulin" intron <1..65 /number=1 variation 3 /note="allele 1" /replace="g" exon 66..344 /number=2 intron 345..1022 /number=2 exon 1023..1050 /number=3 intron 1051..>1276 /number=3 BASE COUNT 353 a 253 c 269 g 400 t 1 others ORIGIN 1 caagttatcc gtaattgaaa taccctggta attaatattc atttgtcttt tcctgatttt 61 ttcaggtrct ccaaagattc aggtttactc acgtcatccg gcagagaatg gaaagccaaa 121 ttttctgaat tgctatgtgt ctgggtttca tccgtccgac attgaagttg acttactgaa 181 gaatggaaag aaaattgaaa aagtggagca ttcagacttg tctttcagca aggactggtc 241 tttctatctc ttgtactaca ccgagtttac ccccaatgaa aaagatgagt atgcctgccg 301 tgtgagccat gtgactttat caacacccaa gacagtaaag tggggtaagt cttacgttct 361 tttgtaggct gctgaaagtt gtgtatgggt agtcatgtca taaagctgct ttgatataaa 421 aaaaattcgt ctatggccat actgccctga atgagtccca tcccgtctga taaaaaaaaa 481 tcttcatatt gggattgtca gggaatgtgc ttaaagatca gattagagac aacggctgag 541 agagcgctgc acagcattct tctgaaccag cagtttccct gcagctgagc agggagcagc 601 agcagcagtt gcacaaatac atatgcactc ctaacacttc ttacctactg acttcctcag 661 ctttcgtggc agctttaggt atatttagca ctaatgaaca tcaggaaggt ataggccttt 721 ctttgtaaat ccttctatcc tagcatccta taatcctgga ctcctccagt actctctggc 781 tggattggta tctgaggcta gtaggtgggg cttgttcctg ctgggtagct ccaaacaagg 841 tattcatgga taggaacagc agcctatttt gccagcctta tttcttaata gttttagaaa 901 tctgttagta cgtggtgttt tttgttttgt tttgttttaa cacagtgtaa acaaaaagta 961 catgtatttt aaaagtaaaa cttaatgtct tcctttttct ttctccactg tctttttcat 1021 agatcgaaac atgtaaccag catcatggag gtaagttctt gaccttaatt aaatgttttt 1081 tgtttcactg gggactattt atagacagcc ctaacatgat aaccctcact atgtggagaa 1141 cattgacaga gtagcatttt agcaggcaaa gaggaatcct atagggttac attccctttt 1201 cctgtggagt ggcatgaaaa aggtatgtgg ccccagctgt ggccacatta ctgactctac 1261 agggagggca aaggaa // LOCUS AACCOSIV1 168 bp DNA PRI 26-JAN-1998 DEFINITION Aotus azarai cytochrome c oxidase subunit IV gene, exon 3. ACCESSION AF042765 VERSION AF042765.1 GI:2809514 KEYWORDS . SEGMENT 1 of 3 SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 168) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Molecular evolution of cytochrome c oxidase subunit IV: evidence for positive selection in simian primates JOURNAL J. Mol. Evol. 44 (5), 477-491 (1997) MEDLINE 97277139 REFERENCE 2 (bases 1 to 168) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Direct Submission JOURNAL Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E. Canfield, Detroit, MI 48201, USA FEATURES Location/Qualifiers source 1..168 /organism="Aotus azarai" /db_xref="taxon:30591" exon 1..168 /number=3 BASE COUNT 40 a 42 c 54 g 32 t ORIGIN 1 gaagtgttgt gaagagcgaa gactatgcgc tcccaagtta tgtggatcgg cgtgactatc 61 ccttgcccga cgtggcccat gtcaggcacc tgtcggccag ccagaaggcc ttgaaggaga 121 aggagaaggc ctcctggagc agcctctcca tggatgagaa agtcgagt // LOCUS AACCOSIV2 132 bp DNA PRI 26-JAN-1998 DEFINITION Aotus azarai cytochrome c oxidase subunit IV gene, exon 4. ACCESSION AF042766 VERSION AF042766.1 GI:2809515 KEYWORDS . SEGMENT 2 of 3 SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 132) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Molecular evolution of cytochrome c oxidase subunit IV: evidence for positive selection in simian primates JOURNAL J. Mol. Evol. 44 (5), 477-491 (1997) MEDLINE 97277139 REFERENCE 2 (bases 1 to 132) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Direct Submission JOURNAL Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E. Canfield, Detroit, MI 48201, USA FEATURES Location/Qualifiers source 1..132 /organism="Aotus azarai" /db_xref="taxon:30591" exon 1..132 /number=4 BASE COUNT 30 a 25 c 38 g 39 t ORIGIN 1 tgtatcgtat tcagttcaag gagagctttg ctgagatgaa caggggctcc aatgagtgga 61 agacggttgt gggtgctgcc atgttcttca tcggcttcac agcaattctt atcatcttgg 121 agaagcgcta tg // LOCUS AACCOSIV3 137 bp DNA PRI 26-JAN-1998 DEFINITION Aotus azarai cytochrome c oxidase subunit IV gene, exon 5; and partial cds. ACCESSION AF042767 VERSION AF042767.1 GI:2809516 KEYWORDS . SEGMENT 3 of 3 SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 137) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Molecular evolution of cytochrome c oxidase subunit IV: evidence for positive selection in simian primates JOURNAL J. Mol. Evol. 44 (5), 477-491 (1997) MEDLINE 97277139 REFERENCE 2 (bases 1 to 137) AUTHORS Wu,W., Goodman,M., Lomax,M.I. and Grossman,L.I. TITLE Direct Submission JOURNAL Submitted (14-JAN-1998) CMMG, Wayne State University, 540 E. Canfield, Detroit, MI 48201, USA FEATURES Location/Qualifiers source 1..137 /organism="Aotus azarai" /db_xref="taxon:30591" mRNA join(AF042765.1:<1..168,AF042766.1:1..132,1..>137) /product="cytochrome c oxidase subunit IV" CDS join(AF042765.1:<1..168,AF042766.1:1..132,1..137) /codon_start=3 /product="cytochrome c oxidase subunit IV" /protein_id="AAB97755.1" /db_xref="GI:2809518" /translation="SVVKSEDYALPSYVDRRDYPLPDVAHVRHLSASQKALKEKEKAS WSSLSMDEKVELYRIQFKESFAEMNRGSNEWKTVVGAAMFFIGFTAILIILEKRYVYG PLPHTFDKEWVAMQTKRMLDLKVNPVDGLASKWDYDKKEWKK" exon 1..137 /number=5 BASE COUNT 36 a 36 c 43 g 22 t ORIGIN 1 tgtacggccc cctcccgcac acctttgaca aagagtgggt ggccatgcag accaagagga 61 tgctggacct gaaggtgaac cctgtcgatg gcctcgcctc caagtgggac tacgacaaga 121 aggagtggaa gaagtga // LOCUS AAU18601 1771 bp DNA PRI 17-JAN-1997 DEFINITION Aotus azarae interphotoreceptor retinoid-binding protein (IRBP) gene, intron 1, complete sequence. ACCESSION U18601 VERSION U18601.1 GI:624187 KEYWORDS . SOURCE Azara's night monkey. ORGANISM Aotus azarai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Aotinae; Aotus. REFERENCE 1 (bases 1 to 1771) AUTHORS Harada,M.L., Schneider,H., Schneider,M.P., Sampaio,I., Czelusniak,J. and Goodman,M. TITLE DNA evidence on the phylogenetic systematics of New World monkeys: support for the sister-grouping of Cebus and Saimiri from two unlinked nuclear genes JOURNAL Mol. Phylogenet. Evol. 4 (3), 331-349 (1995) MEDLINE 96111507 REFERENCE 2 (bases 1 to 1771) AUTHORS Harada,M.L. TITLE Direct Submission JOURNAL Submitted (13-DEC-1994) Universidade Federal do Para, Departamento de Genetica, Campus Universitario do Guama, Belem, Para, 66075-900, Brazil FEATURES Location/Qualifiers source 1..1771 /organism="Aotus azarai" /db_xref="taxon:30591" /tissue_type="lymphocytes" /dev_stage="adult" gene 1..1771 /gene="IRBP" intron 1..1771 /gene="IRBP" /note="interphotoreceptor retinoid-binding protein" /number=1 BASE COUNT 384 a 443 c 533 g 411 t ORIGIN 1 gtgagaccca agggagacct ggccgggccc agtcctggga gtgagttgac ctgtcgtttg 61 cacatgcagg gctctgtgca caatgcgtga caatggcttt tagatttgtt ctcatgctta 121 agttgtggcc agttgagtcc tttcctcttt ccatccactg ttccatccac tctctgggac 181 cctggtgctg ctgtagaacc tccgtagaac attcatgtta ggttggtgtg aaagtacttt 241 taattgcaaa acccacaatt acttttgcat caacctcacg ggaagccagt ttggaagcct 301 cgggatagac agagtttcag ccttggctgg gtggaaggtg agcgttggcg gggcttctca 361 tcgtcagtgt gggagaagag gccaacatgt ggcagaggtg gcggtgggct tcaccgcgtg 421 ccccaccgca ggccgagagc tccgcccggg cagcactcac tccacgctgt tctcctacct 481 gtggctttgc tgcattgtca cagttgggca gggcagcatg tgtcatgaat cccttgcaag 541 gagggtctga gactggggtt gggtgcaggc agtttgtctg ggaggtggtt gctgaagcag 601 gtgtgaagga gggagcaggg agagtgagat aggaaggtga caggcaggtc cctcaaagct 661 gttctgctga agccaggacg ctgacaagtg tggggatgct cccaggcaca gttctctgcg 721 ggcgggcccc agggctcctg tcccgctttg gccaagagtt gccctgagga cataactcgg 781 ggtggggcag gctcccctct cttggagaag gcctgagctg agggtggaaa gacaggatgg 841 tgctgtggga gagcctgtca gtggggccag gtgcagctga aatcagaggg ggctgagagt 901 gccaacggca tctgttacag aattctcatc cccattttgc ataactgagg cccagagagg 961 tgcagagggg agtggcctgg agccagagag ctgtgactga aggcagggca gggcctggag 1021 ggcagtgtct ctgtcagcac aggctccttg ccccagtcca gctcaccaag tcctgccgcc 1081 ctcccgcagc cttagagagg gaggaagagg tgcatccaca tggaagtagc ctgtgctagg 1141 ctttcagaat acccagtttc caaattaatt gcttcttcct ttctggtata gccaaggttc 1201 acaatttgga gtcagatgtg gattcagatg ctggctccac cacttattga ctgtgtaacc 1261 tgggactagt tacttaatct cactgtgctt cagtttttcc gtggaaaaga tggggaccat 1321 gttatctcct gtacaggtgg ctgtgaggat gacgataagc tctgcaaagt gcttagtaca 1381 gggccaggca cctgttaaag gtaactaaca tcttccaatc ctgccccagt ggaggggaag 1441 ataagcttag agatgttggg aagtatctgg cgaggttgga cgaatcagag aggagaccat 1501 tcctgggcct tccagctctg aacaccagag cagacaggag catcctctgc aaggaggctt 1561 cccatggatc acacatgtcc cagtggcatg tcacatccca gacatgccac tgggaaagtc 1621 ccaggtgcct actgactcct tcagaaatgt cagttcctgt cccatgccct taatatttcc 1681 catgacataa aggcgatcca tggcacctgc tttcctgggc tcgaaaaccg gctgccctcc 1741 tgacactgag caggacctcc aactcttgca g //