# STOCKHOLM 1.0 # # This is an example of a Stockholm multiple sequence alignment # file. It is deliberately designed to exercise many of the # features of Stockholm format, in order to test a parser. # #=GF ID 14-3-3 #=GF AC PF00244 #=GF DE 14-3-3 proteins #=GF AU Finn RD #=GF AL Clustalw #=GF SE Prosite #=GF GA 25 25 #=GF TC 35.40 35.40 #=GF NC 8.80 8.80 #=GF BM hmmbuild -f HMM SEED #=GF BM hmmcalibrate --seed 0 HMM #=GF RN [1] #=GF RM 95327195 #=GF RT Structure of a 14-3-3 protein and implications for #=GF RT coordination of multiple signalling pathways. #=GF RA Xiao B, Smerdon SJ, Jones DH, Dodson GG, Soneji Y, Aitken #=GF RA A, Gamblin SJ; #=GF RL Nature 1995;376:188-191. #=GF RN [2] #=GF RM 95327196 #=GF RT Crystal structure of the zeta isoform of the 14-3-3 #=GF RT protein. #=GF RA Liu D, Bienkowska J, Petosa C, Collier RJ, Fu H, Liddington #=GF RA R; #=GF RL Nature 1995;376:191-194. #=GF DR PROSITE; PDOC00633; #=GF DR SMART; 14_3_3; #=GF DR PRINTS; PR00305; #=GF SQ 119 #=GS 1431_ENTHI/4-239 WT 0.42 #=GS seq1 WT 0.40 #=GS seq2 WT 0.41 #=GS seq3 WT 0.43 #=GS seq4 WT 0.44 #=GS seq5 WT 0.45 #=GS seq6 WT 0.46 #=GS seq4 AC PF00001 #=GS seq4 DE A description of seq4. #=GS seq1 NEWTAG foo #=GS seq2 NEWTAG bar #=GS seq3 NEWTAG baz #=GS seq3 TAG2 foo2 #=GS seq4 TAG2 foo3 #=GS seq5 TAG2 foo4 #=GC SS_cons xxxxxxxxxxxxxxxxxxx #=GC SA_cons xxxxxxxxxxxxxxxxxxx #=GC New_long_tag_thingie xxxxxxxxxxxxxxxxxxx 1431_ENTHI/4-239 ACDEFGHKLMNPQRSTVWY #=GR seq1 SS ................... #=GR seq1 SA 0000000000000000000 seq1 ACDEFGHKLMNPQRSTVWY seq2 ACDEFGHKLMNPQRSTVWY seq3 ACDEFGHKLMNPQRSTVWY seq4 ACDEFGHKLMNPQRSTVWY seq5 ACDEFGHKLMNPQRSTVWY seq6 ACDEFGHKLMNPQRSTVWY #=GR seq6 SS ................... #=GR seq6 SA 9999999999999999999 #=GR seq6 Invented_tag ******************* #=GC SS_cons xxxxxxxxxxxxxxxxxxx #=GC SA_cons xxxxxxxxxxxxxxxxxxx #=GC New_long_tag_thingie xxxxxxxxxxxxxxxxxxx 1431_ENTHI/4-239 ACDEFGHKLMNPQRSTVWY #=GR seq1 SS ................... #=GR seq1 SA 0000000000000000000 seq1 ACDEFGHKLMNPQRSTVWY seq2 ACDEFGHKLMNPQRSTVWY seq3 ACDEFGHKLMNPQRSTVWY seq4 ACDEFGHKLMNPQRSTVWY seq5 ACDEFGHKLMNPQRSTVWY seq6 ACDEFGHKLMNPQRSTVWY #=GR seq6 SS ................... #=GR seq6 SA 9999999999999999999 #=GR seq6 Invented_tag ******************* # # And here's some trailing comments, just to # try to confuse a parser. # //