# STOCKHOLM 1.0 #=GF ID 14-3-3 #=GF AC PF00244 #=GF DE 14-3-3 proteins #=GF AU Finn RD #=GF AL Clustalw #=GF SE Prosite #=GF GA 25 25 #=GF TC 35.40 35.40 #=GF NC 8.80 8.80 #=GF BM hmmbuild -f HMM SEED #=GF BM hmmcalibrate --seed 0 HMM #=GF RN [1] #=GF RM 95327195 #=GF RT Structure of a 14-3-3 protein and implications for #=GF RT coordination of multiple signalling pathways. #=GF RA Xiao B, Smerdon SJ, Jones DH, Dodson GG, Soneji Y, Aitken A, #=GF RA Gamblin SJ; #=GF RL Nature 1995;376:188-191. #=GF RN [2] #=GF RM 95327196 #=GF RT Crystal structure of the zeta isoform of the 14-3-3 protein. #=GF RA Liu D, Bienkowska J, Petosa C, Collier RJ, Fu H, Liddington #=GF RA R; #=GF RL Nature 1995;376:191-194. #=GF RN [3] #=GF RM 96182649 #=GF RT Interaction of 14-3-3 with signaling proteins is mediated by #=GF RT the recognition of phosphoserine. #=GF RA Muslin AJ, Tanner JW, Allen PM, Shaw AS; #=GF RL Cell 1996;84:889-897. #=GF RN [4] #=GF RM 97424374 #=GF RT The 14-3-3 protein binds its target proteins with a common #=GF RT site located towards the C-terminus. #=GF RA Ichimura T, Ito M, Itagaki C, Takahashi M, Horigome T, Omata #=GF RA S, Ohno S, Isobe T #=GF RL FEBS Lett 1997;413:273-276. #=GF RN [5] #=GF RM 96394689 #=GF RT Molecular evolution of the 14-3-3 protein family. #=GF RA Wang W, Shakes DC #=GF RL J Mol Evol 1996;43:384-398. #=GF RN [6] #=GF RM 96300316 #=GF RT Function of 14-3-3 proteins. #=GF RA Jin DY, Lyu MS, Kozak CA, Jeang KT #=GF RL Nature 1996;382:308-308. #=GF DR PROSITE; PDOC00633; #=GF DR SMART; 14_3_3; #=GF DR PRINTS; PR00305; #=GF SQ 16 1431_ENTHI/4-239 REDCVYTAKLAEQSERYDEMVQCMKQVAEMEA...ELSIEERNLLSVAYKNVIGAKRASWRIISSLEQKEQAKG.NDKHVEIIKGYRAKIEKELSTCCDDVLKVIQENLLPKA..STSESKVFFKKMEGDYYRYFAEFTVDEKRKEVADKSLAAYTEATEISNAELAPTHPIRLGLALNFSVFYFEIMNDADKACQLAKQAFDDAIAKLDEVPENMYKDSTLIMQLLRDNLTLWTSDACDEE #=GS 1431_ENTHI/4-239 AC P42648 1432_ENTHI/4-238 REDLVYLSKLAEQSERYEEMVQYMKQVAEMGT...ELSVEERNLISVAYKNVVGSRRASWRIISSLEQKEQAKG.NTQRVELIKTYRAKIEQELSQKCDDVLKIITEFLLKNS..TSIESKVFFKKMEGDYYRYYAEFTVDEKRKEVADKSLAAYQEATDTA.ASLVPTHPIRLGLALNFSVFYYQIMNDADKACQLAKEAFDEAIQKLDEVPEESYKESTLIMQLLRDNLTLWTSDMGDDE #=GS 1432_ENTHI/4-238 AC P42649 1433_CAEEL/5-237 VEELVQRAKLAEQAERYDDMAAAMKKVTEQGQ...ELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEG...SEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFLIVKA..GAAESKAFYLKMKGDYYRYLAEVAS.EDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAED #=GS 1433_CAEEL/5-237 AC P41932 1433_LYCES/9-246 REENVYMAKLADRAESDEEMVEFMEKVSNSLGS.EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG.NEEHVNSIREYRSKIENELSKICDGILKLLDSKLIPSA..TSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIASAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDG #=GS 1433_LYCES/9-246 AC P93209 1433_XENLA/1-227 .......AKLSEQAERYDDMAASMKAVTELGA...ELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEG...NDKRQQMAREYREKVETELQDICKDVLDLLDRFLVPNA..TPPESKVFYLKMKGDYYRYLSEVASGDSKQETVASSQQAYQEAFEISKSEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKSAFDEAIRELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGEE #=GS 1433_XENLA/1-227 AC P29309 1434_LYCES/6-243 REENVYLAKLAEQAERYEEMIEFMEKVAKTADV.EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG.NEDHVNTIKEYRSKIEADLSKICDGILSLLESNLIPSA..STAESKVFHLKMKGDYHRYLAEFKTGTERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDNADDV #=GS 1434_LYCES/6-243 AC P42652 143B_VICFA/7-242 RENFVYIAKLAEQAERYEEMVDSMKNVANLDV...ELTIEERNLLSVGYKNVIGARRASWRILSSIEQKEESKG.NDVNAKRIKEYRHKVETELSNICIDVMRVIDEHLIPSA..AAGESTVFYYKMKGDYYRYLAEFKTGNEKKEAGDQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG #=GS 143B_VICFA/7-242 AC P42654 143E_HUMAN/4-239 REDLVYQAKLAEQAERYDEMVESMKKVAGMDV...ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKG.GEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAA..NTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDG #=GS 143E_HUMAN/4-239 AC P42655 143F_MOUSE/3-240 REQLLQRARLAEQAERYDDMASAMKAVTELNE...PLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADG.NEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE #=GS 143F_MOUSE/3-240 AC P11576 143R_ARATH/7-245 RDQYVYMAKLAEQAERYEEMVQFMEQLVTGATPAEELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRK.NDEHVSLVKDYRSKVESELSSVCSGILKLLDSHLIPSA..GASESKVFYLKMKGDYHRYMAEFKSGDERKTAAEDTMLAYKAAQDIAAADMAPTHPIRLGLALNFSVFYYEILNSSDKACNMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDYAGAD #=GS 143R_ARATH/7-245 AC P42647 143S_HUMAN/3-238 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGE...ELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEG.SEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEA..GDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEE #=GS 143S_HUMAN/3-238 AC P31947 143T_HUMAN/3-236 KTELIQKAKLAEQAERYDDMATCMKAVTEQGA...ELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTDT...SDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANA..TNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE #=GS 143T_HUMAN/3-236 AC P27348 143Z_DROME/6-239 KEELVQKAKLAEQSERYDDMAQAMKSVTETGV...ELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEA...SARKQQLAREYRERVEKELREICYEVLGLLDKYLIPKA..SNPESKVFYLKMKGDYYRYLAEVATGDARNTVVDDSQTAYQDAFDISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDE #=GS 143Z_DROME/6-239 AC P29310 BMH1_YEAST/4-240 REDSVYLAKLAEQAERYEEMVENMKTVASSGQ...ELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKEKSEHQVELICSYRSKIETELTKISDDILSVLDSHLIPSA..TTGESKVFYYKMKGDYHRYLAEFSSGDAREKATNASLEAYKTASEIATTELPPTHPIRLGLALNFSVFYYEIQNSPDKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMSESG #=GS BMH1_YEAST/4-240 AC P29311 RA24_SCHPO/6-241 REDAVYLAKLAEQAERYEGMVENMKSVASTDQ...ELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKG.NTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNA..ASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYSA #=GS RA24_SCHPO/6-241 AC P42656 RA25_SCHPO/5-240 RENSVYLAKLAEQAERYEEMVENMKKVACSND...KLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRG.NTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAA..TTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYNQ #=GS RA25_SCHPO/5-240 AC P42657 // # STOCKHOLM 1.0 #=GF ID rrm #=GF AC PF00076 #=GF DE RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) #=GF GA 14.6 0.0 #=GF TC 14.5 14.5 #=GF TC 14.6 0.1 ARP2_PLAFA/364-438 VEVTYLF....STYLVNGQTL..IYS.....N.ISVV....LVILY.... CABA_MOUSE/77-147 MFVGGL......SWDTSKKDLKDYFT.....K.FGEV..VDCTIKMD... GR10_BRANA/8-79 CFVGGL......AWATGDAELERTFS.....Q.FGEV..IDSKIIND... NSR1_YEAST/170-241 IFVGRL......SWSIDDEWLKKEFE.....H.IGGV..IGARVIYE... RT19_ARATH/33-104 LYIGGL......SPGTDEHSLKDAFS.....S.FNGV..TEARVMTN... RO28_NICSY/99-170 LFVGNL......PYDIDSEGLAQLFQ.....Q.AGVV..EIAEVIYN... RO33_NICSY/116-187 LYVGNL......PFSMTSSQLSEIFA.....E.AGTV..ANVEIVYD... RO33_NICSY/219-290 LYVANL......SWALTSQGLRDAFA.....D.QPGF..MSAKVIYD... GBP2_YEAST/221-291 VFIINL......PYSMNWQSLKDMFK.....E.CGHV..LRADVELD... HUD_HUMAN/48-119 LIVNYL......PQNMTQEEFRSLFG.....S.IGEI..ESCKLVRD... SXLF_DROME/127-198 LIVNYL......PQDMTDRELYALFR.....A.IGPI..NTCRIMRD... PABP_DROME/4-75 LYVGDL......PQDVNESGLFDKFS.....S.AGPV..LSIRVCRD... NAM8_YEAST/165-237 IFVGDL......APNVTESQLFELFI.....NRYAST..SHAKIVHD... PUB1_YEAST/163-234 LFVGDL......NVNVDDETLRNAFK.....D.FPSY..LSGHVMWD... TIA1_HUMAN/108-179 VFVGDL......SPQITTEDIKAAFA.....P.FGRI..SDARVVKD... PES4_YEAST/93-164 LFIGDL......HETVTEETLKGIFK.....K.YPSF..VSAKVCLD... NOP4_YEAST/28-98 LFVRSI......PQDVTDEQLADFFS.....N.FAPI..KHAVVVKD... CST2_HUMAN/18-89 VFVGNI......PYEATEEQLKDIFS.....E.VGPV..VSFRLVYD... RN15_YEAST/20-91 VYLGSI......PYDQTEEQILDLCS.....N.VGPV..INLKMMFD... YIS1_YEAST/66-136 IFVGNI......TPDVTPEQIEDHFK.....D.CGQI..KRITLLYD... IF4B_HUMAN/98-168 AFLGNL......PYDVTEESIKEFFR.....G.LNIS...AVRLPR.... NSR1_YEAST/269-340 LFLGNL......SFNADRDAIFELFA.....K.HGEV..VSVRIPTH... GBP2_YEAST/124-193 IFVRNL......TFDCTPEDLKELFG.....T.VGEV..VEADIIT.... NOP3_YEAST/127-190 LFVRPF......PLDVQESELNEIFG.....P.FGPM..KEVKILN.... U2AF_HUMAN/261-332 LFIGGL......PNYLNDDQVKELLT.....S.FGPL..KAFNLVKD... U2AF_SCHPO/312-383 IYISNL......PLNLGEDQVVELLK.....P.FGDL..LSFQLIKN... ELAV_DROME/250-322 LYVSGL......PKTMTQQELEAIFA.....P.FGAI..ITSRILQN... SXLF_DROME/213-285 LYVTNL......PRTITDDQLDTIFG.....K.YGSI..VQKNILRD... ELAV_DROME/404-475 IFIYNL......APETEEAALWQLFG.....P.FGAV..QSVKIVKD... MSSP_HUMAN/31-102 LYIRGL......PPHTTDQDLVKLCQ.....P.YGKI..VSTKAILD... NONA_DROME/304-369 LYVGNL......TNDITDDELREMFK.....P.YGEI..SEIFSNLD... PABP_DROME/92-162 VFIKNL......DRAIDNKAIYDTFS.....A.FGNI..LSCKVATD... PABP_DROME/183-254 VYVKNF......TEDFDDEKLKEFFE.....P.YGKI..TSYKVMS.... PABP_SCHPO/263-333 VYIKNL......DTEITEQEFSDLFG.....Q.FGEI..TSLSLVKD... PUB1_YEAST/342-407 AYIGNI......PHFATEADLIPLFQ.....N.FGFI..LDFKHYPE... PUB1_YEAST/76-146 LYVGNL......DKAITEDILKQYFQ.....V.GGPI..ANIKIMID... TIA1_HUMAN/9-78 LYVGNL......SRDVTEALILQLFS.....Q.IGPC..KNCKMIMD... TIA1_HUMAN/216-281 VYCGGV......TSGLTEQLMRQTFS.....P.FGQI..MEIRVFPD... EWS_HUMAN/363-442 IYVQGL......NDSVTLDDLADFFK.....Q.CGVV..K.MNKRTG... PTB_HUMAN/186-253 IIVENL......FYPVTLDVLHQIFS.....K.FGTV....LKIIT.... ROC_HUMAN/18-82 VFIGNL.....NTLVVKKSDVEAIFS.....K.YGKI..VGCSVHK.... YIS5_YEAST/33-104 IYIGNL......NRELTEGDILTVFS.....E.YGVP..VDVILSRD... RU1A_HUMAN/12-84 IYINNLNE..KIKKDELKKSLYAIFS.....Q.FGQI..LDILVSR.... RU2B_HUMAN/9-81 IYINNMND..KIKKEELKRSLYALFS.....Q.FGHV..VDIVALK.... CABA_MOUSE/161-231 IFVGGL......NPEATEEKIREYFG.....Q.FGEI..EAIELPID... ROA1_BOVIN/106-176 IFVGGI......KEDTEEHHLRDYFE.....Q.YGKI..EVIEIMTD... SQD_DROME/138-208 IFVGGL......TTEISDEEIKTYFG.....Q.FGNI..VEVEMPLD... RB97_DROME/34-104 LFIGGL......APYTTEENLKLFYG.....Q.WGKV..VDVVVMRD... SQD_DROME/58-128 LFVGGL......SWETTEKELRDHFG.....K.YGEI..ESINVKTD... ROG_HUMAN/10-81 LFIGGL......NTETNEKALEAVFG.....K.YGRI..VEVLLMKD... SFR2_CHICK/16-87 LKVDNL......TYRTSPDTLRRVFE.....K.YGRV..GDVYIPRD... SFR1_HUMAN/17-85 IYVGNL......PPDIRTKDIEDVFY.....K.YGAI..RDIDLKNR... SR55_DROME/5-68 VYVGGL......PYGVRERDLERFFK.....G.YGRT..RDILIKN.... SFR3_HUMAN/12-78 VYVGNL......GNNGNKTELERAFG.....Y.YGPL..RSVWVARN... TRA2_DROME/99-170 IGVFGL......NTNTSQHKVRELFN.....K.YGPI..ERIQMVID... RU17_DROME/104-175 LFIARI......NYDTSESKLRREFE.....F.YGPI..KKIVLIHD... GBP2_YEAST/351-421 IYCSNL......PFSTARSDLFDLFG.....P.IGKI..NNAELKP.... RNP1_YEAST/37-109 LYVGNL......PKNCRKQDLRDLFE.....PNYGKI..TINMLKKK... PES4_YEAST/305-374 IFIKNL......PTITTRDDILNFFS.....E.VGPI..KSIYLSN.... YHH5_YEAST/315-384 ILVKNL......PSDTTQEEVLDYFS.....T.IGPI..KSVFISEK... YHC4_YEAST/348-415 IFVGQL......DKETTREELNRRFS.....T.HGKI..QDINLIFK... IF39_YEAST/79-157 IVVNGAPVIPSAKVPVLKKALTSLFS.....K.AGKV..VNMEFPID... MEI2_SCHPO/197-265 LFVTNL......PRIVPYATLLELFS.....K.LGDV..KGIDTSSL... NOP4_YEAST/292-363 VFVRNV......PYDATEESLAPHFS.....K.FGSV..KYALPVID... MODU_DROME/260-326 VVVGLI......GPNITKDDLKTFFE.....K.VAPV..EAVTISSN... ROF_HUMAN/113-183 VRLRGL......PFGCTKEEIVQFFS.....G.LEIV.PNGITLPVD... MODU_DROME/342-410 LVVENVG....KHESYSSDALEKIFK.....K.FGDV..EEIDVVC.... NUCL_CHICK/283-352 LFVKNL......TPTKDYEELRTAIK.....EFFGKK...NLQVSEV... NONA_DROME/378-448 LRVSNL......TPFVSNELLYKSFE.....I.FGPI..ERASITVD... PSF_HUMAN/373-443 LSVRNL......SPYVSNELLEEAFS.....Q.FGPI..ERAVVIVD... NOP3_YEAST/202-270 ITMKNL......PEGCSWQDLKDLAR.....E.NSLE..TTFSSVN.... SFR1_HUMAN/122-186 VVVSGL......PPSGSWQDLKDHMR.....E.AGDV..CYADVYRD... CPO_DROME/453-526 LFVSGL......PMDAKPRELYLLFR.....A.YEGY..EGSLLKV.... WHI3_YEAST/540-614 LYVGNL......PSDATEQELRQLFS.....G.QEGF..RRLSFRNK... RU1A_HUMAN/210-276 LFLTNL......PEETNELMLSMLFN.....Q.FPGF..KEVRLVPG... RU2B_HUMAN/153-220 LFLNNL......PEETNEMMLSMLFN.....Q.FPGF..KEVRLVPG... RU1A_YEAST/229-293 LLIQNL......PSGTTEQLLSQILG.....N.EALV...EIRLVSV... MODU_DROME/177-246 VFVTNL......PNEYLHKDLVALFA.....K.FGRL..SALQRFTN... PR24_YEAST/43-111 VLVKNL......PKSYNQNKVYKYFK.....H.CGPI..IHVDVAD.... MODU_DROME/422-484 ILVTNL......TSDATEADLRKVFN.....D.SGEI..ESIIMLG.... PR24_YEAST/212-284 IMIRNL.....STELLDENLLRESFE.....G.FGSI..EKINIPAG... SSB1_YEAST/39-114 IFIGNV......AHECTEDDLKQLFV.....EEFGDE..VSVEIPIK... PTB_HUMAN/61-128 IHIRKL......PIDVTEGEVISLGL.....P.FGKV..TNLLMLKG... RN12_YEAST/200-267 IVIKFQ......GPALTEEEIYSLFR.....R.YGTI....IDIFP.... D111_ARATH/281-360 LLLRNMVG.PGQVDDELEDEVGGECA.....K.YGTV..TRVLIFE.... U2AG_HUMAN/67-142 CAVSDVEM..QEHYDEFFEEVFTEME.....EKYGEV..EEMNVCDN... IF39_SCHPO/41-124 VVIEGAP....VVEEAKQQDFFRFLSSKVLAK.IGKVKENGFYMPFE... LA_DROME/151-225 AYAKGF......PLDSQISELLDFTA.....N.YDKV..VNLTMRNS... LA_HUMAN/113-182 VYIKGF......PTDATLDDIKEWLE.....D.KGQV..LNIQMRR.... PR24_YEAST/119-190 LWMTNF......PPSYTQRNIRDLLQ.....D.INVV.ALSIRLPSL... ARP2_PLAFA/364-438 ....HQKFKETVLGRNSGFGFVSYDNVISAQHAIQFMNG.Y...FVNNKY CABA_MOUSE/77-147 ..........PNTGRSRGFGFILFKDSSSVEKVLD.QKE.H...RLDGRV GR10_BRANA/8-79 ..........RETGRSRGFGFVTFKDEKSMKDAIDEMNG.K...ELDGRT NSR1_YEAST/170-241 ..........RGTDRSRGYGYVDFENKSYAEKAIQEMQG.K...EIDGRP RT19_ARATH/33-104 ..........KVTGRSRGYGFVNFISEDSANSAISAMNG.Q...ELNGFN RO28_NICSY/99-170 ..........RETDRSRGFGFVTMSTVEEADKAVELYSQ.Y...DLNGRL RO33_NICSY/116-187 ..........RVTDRSRGFAFVTMGSVEEAKEAIRLFDG.S...QVGGRT RO33_NICSY/219-290 ..........RSSGRSRGFGFITFSSAEAMNSALDTMNE.V...ELEGRP GBP2_YEAST/221-291 ...........FNGFSRGFGSVIYPTEDEMIRAIDTFNG.M...EVEGRV HUD_HUMAN/48-119 ..........KITGQSLGYGFVNYIDPKDAEKAINTLNG.L...RLQTKT SXLF_DROME/127-198 ..........YKTGYSFGYAFVDFTSEMDSQRAIKVLNG.I...TVRNKR PABP_DROME/4-75 ..........VITRRSLGYAYVNFQQPADAERALDTMNF.D...LVRNKP NAM8_YEAST/165-237 ..........QVTGMSKGYGFVKFTNSDEQQLALSEMQG.V...FLNGRA PUB1_YEAST/163-234 ..........MQTGSSRGYGFVSFTSQDDAQNAMDSMQG.Q...DLNGRP TIA1_HUMAN/108-179 ..........MATGKSKGYGFVSFFNKWDAENAIQQMGG.Q...WLGGRQ PES4_YEAST/93-164 ..........SVTKKSLGHGYLNFEDKEEAEKAMEELNY.T...KVNGKE NOP4_YEAST/28-98 ...........TNKRSRGFGFVSFAVEDDTKEALAKARK.T...KFNGHI CST2_HUMAN/18-89 ..........RETGKPKGYGFCEYQDQETALSAMRNLNG.R...EFSGRA RN15_YEAST/20-91 ..........PQTGRSKGYAFIEFRDLESSASAVRNLNG.Y...QLGSRF YIS1_YEAST/66-136 ..........RNTGTPKGYGYIEFESPAYREKALQ.LNG.G...ELKGKK IF4B_HUMAN/98-168 ........EPSNPERLKGFGYAEFEDLDSLLSALS.LNE.E...SLGNRR NSR1_YEAST/269-340 ..........PETEQPKGFGYVQFSNMEDAKKALDALQG.E...YIDNRP GBP2_YEAST/124-193 ...........SKGHHRGMGTVEFTKNESVQDAISKFDG.A...LFMDRK NOP3_YEAST/127-190 .................GFAFVEFEEAESAAKAIEEVHG.K...SFANQP U2AF_HUMAN/261-332 ..........SATGLSKGYAFCEYVDINVTDQAIAGLNG.M...QLGDKK U2AF_SCHPO/312-383 ..........IADGSSKGFCFCEFKNPSDAEVAISGLDG.K...DTYGNK ELAV_DROME/250-322 .........AGNDTQTKGVGFIRFDKREEATRAIIALNG.T...TPSSCT SXLF_DROME/213-285 ..........KLTGRPRGVAFVRYNKREEAQEAISALNNVI...PEGGSQ ELAV_DROME/404-475 ..........PTTNQCKGYGFVSMTNYDEAAMAIRALNG.Y...TMGNRV MSSP_HUMAN/31-102 ..........KTTNKCKGYGFVDFDSPAAAQKAVSALKA.S...GVQAQK NONA_DROME/304-369 ................KNFTFLKVDYHPNAEKAKRALDG.S...MRKGRQ PABP_DROME/92-162 ...........EKGNSKGYGFVHFETEEAANTSIDKVNG.M...LLNGKK PABP_DROME/183-254 ..........KEDGKSKGFGFVAFETTEAAEAAVQALNGKD...MGEGKS PABP_SCHPO/263-333 ...........QNDKPRGFGFVNYANHECAQKAVDELND.K...EYKGKK PUB1_YEAST/342-407 ................KGCCFIKYDTHEQAAVCIVALAN.F...PFQGRN PUB1_YEAST/76-146 ...........KNNKNVNYAFVEYHQSHDANIALQTLNG.K...QIENNI TIA1_HUMAN/9-78 ............TAGNDPYCFVEFHEHRHAAAALAAMNG.R...KIMGKE TIA1_HUMAN/216-281 ................KGYSFVRFNSHESAAHAIVSVNG.T...TIEGHV EWS_HUMAN/363-442 .QPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG.K...DFQGSK PTB_HUMAN/186-253 ...........FTKNNQFQALLQYADPVSAQHAKLSLDG.Q...NIYNAC ROC_HUMAN/18-82 .................GFAFVQYVNERNARAAVAGEDG.R...MIAGQV YIS5_YEAST/33-104 ..........ENTGESQGFAYLKYEDQRSTILAVDNLNG.F...KIGGRA RU1A_HUMAN/12-84 ............SLKMRGQAFVIFKEVSSATNALRSMQG.F...PFYDKP RU2B_HUMAN/9-81 ............TMKMRGQAFVIFKELGSSTNALRQLQG.F...PFYGKP CABA_MOUSE/161-231 ..........PKLNKRRGFVFITFKEEDPVKKVLE.KKF.H...TVSGSK ROA1_BOVIN/106-176 ..........RGSGKKRGFAFVTFDDHDSVDKIVI.QKY.H...TVNGHN SQD_DROME/138-208 ..........KQKSQRKGFCFITFDSEQVVTDLLK.TPK.Q...KIAGKE RB97_DROME/34-104 ..........AATKRSRGFGFITYTKSLMVDRAQE..NRPH...IIDGKT SQD_DROME/58-128 ..........PQTGRSRGFAFIVFTNTEAIDKVSA.ADE.H...IINSKK ROG_HUMAN/10-81 ..........RETNKSRGFAFVTFESPADAKDAARDMNG.K...SLDGKA SFR2_CHICK/16-87 ..........RYTKESRGFAFVRFHDKRDAEDAMDAMDG.A...VLDGRE SFR1_HUMAN/17-85 .............RGGPPFAFVEFEDPRDAEDAVYGRDG.Y...DYDGYR SR55_DROME/5-68 .................GYGFVEFEDYRDADDAVYELNG.K...ELLGER SFR3_HUMAN/12-78 ...............PPGFAFVEFEDPRDAADAVRELDG.R...TLCGCR TRA2_DROME/99-170 ..........AQTQRSRGFCFIYFEKLSDARAAKDSCSG.I...EVDGRR RU17_DROME/104-175 ..........QESGKPKGYAFIEYEHERDMHAAYKHADG.K...KIDSKR GBP2_YEAST/351-421 ..........QENGQPTGVAVVEYENLVDADFCIQKLNN.Y...NYGGCS RNP1_YEAST/37-109 ..........PLKKPLKRFAFIEFQEGVNLKKVKEKMNG.K...IFMNEK PES4_YEAST/305-374 ...........ATKVKYLWAFVTYKNSSDSEKAIKRYNN.F...YFRGKK YHH5_YEAST/315-384 ............QANTPHKAFVTYKNEEESKKAQKCLNK.T...IFKNHT YHC4_YEAST/348-415 ..............PTNIFAFIKYETEEAAAAALESENH.A...IFLNKT IF39_YEAST/79-157 ..........EATGKTKGFLFVECGSMNDAKKIIKSFHGKR...LDLKHR MEI2_SCHPO/197-265 ..............STDGICIVAFFDIRQAIQAAKSLRSQR...FFNDRL NOP4_YEAST/292-363 ..........KSTGLAKGTAFVAFKDQYTYNECIKNAPA.A...GSTSLL MODU_DROME/260-326 ..............RLMPRAFVRLASVDDIPKALK.LHS.T...ELFSRF ROF_HUMAN/113-183 ...........PEGKITGEAFVQFASQELAEKALG.KHK.E...RIGHRY MODU_DROME/342-410 ..............SKAVLAFVTFKQSDAATKALAQLDG.K...TVNKFE NUCL_CHICK/283-352 ...........RIGSSKRFGYVDFLSAEDMDKALQ.LNG.K...KLMGLE NONA_DROME/378-448 ...........DRGKHMGEGIVEFAKKSSASACLRMCNE.K...CFFLTA PSF_HUMAN/373-443 ...........DRGRSTGKGIVEFASKPAARKAFERCSE.G...VFLLTT NOP3_YEAST/202-270 ............TRDFDGTGALEFPSEEILVEALERLNN.I...EFRGSV SFR1_HUMAN/122-186 .................GTGVVEFVRKEDMTYAVRKLDN.T...KFRSHE CPO_DROME/453-526 ........TSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVR...FDPDMP WHI3_YEAST/540-614 .......NTTSNGHSHGPMCFVEFDDVSFATRALAELYG.R...QLPRST RU1A_HUMAN/210-276 ...............RHDIAFVEFDNEVQAGAARDALQG.F...KITQNN RU2B_HUMAN/153-220 ...............RHDIAFVEFENDGQAGAARDALQGFK...ITPSHA RU1A_YEAST/229-293 ................RNLAFVEYETVADATKIKNQLGS.T...YKLQNN MODU_DROME/177-246 .............LNGNKSVLIAFDTSTGAEAVLQAKPKAL...TLGDNV PR24_YEAST/43-111 ...........SLKKNFRFARIEFARYDGALAAIT.KTH.K...VVGQNE MODU_DROME/422-484 .................QKAVVKFKDDEGFCKSFL.ANE.S...IVNNAP PR24_YEAST/212-284 .........QKEHSFNNCCAFMVFENKDSAERALQ.MNR.S...LLGNRE SSB1_YEAST/39-114 .......EHTDGHIPASKHALVKFPTKIDFDNIKENYDT.K...VVKDRE PTB_HUMAN/61-128 ................KNQAFIEMNTEEAANTMVN.YYT.SVTPVLRGQP RN12_YEAST/200-267 ...........PTAANNNVAKVRYRSFRGAISAKNCVSG.I...EIHNTV D111_ARATH/281-360 ......ITEPNFPVHEAVRIFVQFSRPEETTKALVDLDG.R...YFGGRT U2AG_HUMAN/67-142 ...........LGDHLVGNVYVKFRREEDAEKAVIDLNN.R...WFNGQP IF39_SCHPO/41-124 ......EKNGK..KMSLGLVFADFENVDGADLCVQELDGKQ...ILKNHT LA_DROME/151-225 ......YDKPTKSYKFKGSIFLTFETKDQAKAFLE.QEK.I...VYKERE LA_HUMAN/113-182 ..........TLHKAFKGSIFVVFDSIESAKKFVE.TPG.Q...KYKETD PR24_YEAST/119-190 ...........RFNTSRRFAYIDVTSKEDARYCVEKLNG.L...KIEGYT ARP2_PLAFA/364-438 LKV CABA_MOUSE/77-147 IDP GR10_BRANA/8-79 ITV NSR1_YEAST/170-241 INC RT19_ARATH/33-104 ISV RO28_NICSY/99-170 LTV RO33_NICSY/116-187 VKV RO33_NICSY/219-290 LRL GBP2_YEAST/221-291 LEV HUD_HUMAN/48-119 IKV SXLF_DROME/127-198 LKV PABP_DROME/4-75 IRI NAM8_YEAST/165-237 IKV PUB1_YEAST/163-234 LRI TIA1_HUMAN/108-179 IRT PES4_YEAST/93-164 IRI NOP4_YEAST/28-98 LRV CST2_HUMAN/18-89 LRV RN15_YEAST/20-91 LKC YIS1_YEAST/66-136 IAV IF4B_HUMAN/98-168 IRV NSR1_YEAST/269-340 VRL GBP2_YEAST/124-193 LMV NOP3_YEAST/127-190 LEV U2AF_HUMAN/261-332 LLV U2AF_SCHPO/312-383 LHA ELAV_DROME/250-322 DPI SXLF_DROME/213-285 PLS ELAV_DROME/404-475 LQV MSSP_HUMAN/31-102 AKQ NONA_DROME/304-369 LRV PABP_DROME/92-162 VYV PABP_DROME/183-254 LYV PABP_SCHPO/263-333 LYV PUB1_YEAST/342-407 LRT PUB1_YEAST/76-146 VKI TIA1_HUMAN/9-78 VKV TIA1_HUMAN/216-281 VKC EWS_HUMAN/363-442 LKV PTB_HUMAN/186-253 CTL ROC_HUMAN/18-82 LDI YIS5_YEAST/33-104 LKI RU1A_HUMAN/12-84 MRI RU2B_HUMAN/9-81 MRI CABA_MOUSE/161-231 CEI ROA1_BOVIN/106-176 CEV SQD_DROME/138-208 VDV RB97_DROME/34-104 VEA SQD_DROME/58-128 VDP ROG_HUMAN/10-81 IKV SFR2_CHICK/16-87 LRV SFR1_HUMAN/17-85 LRV SR55_DROME/5-68 VVV SFR3_HUMAN/12-78 VRV TRA2_DROME/99-170 IRV RU17_DROME/104-175 VLV GBP2_YEAST/351-421 LQI RNP1_YEAST/37-109 IVI PES4_YEAST/305-374 LLV YHH5_YEAST/315-384 IWV YHC4_YEAST/348-415 MHV IF39_YEAST/79-157 LFL MEI2_SCHPO/197-265 LYF NOP4_YEAST/292-363 IGD MODU_DROME/260-326 ITV ROF_HUMAN/113-183 IEV MODU_DROME/342-410 WKL NUCL_CHICK/283-352 IKL NONA_DROME/378-448 SLR PSF_HUMAN/373-443 TPR NOP3_YEAST/202-270 ITV SFR1_HUMAN/122-186 GET CPO_DROME/453-526 QTI WHI3_YEAST/540-614 VSS RU1A_HUMAN/210-276 AMK RU2B_HUMAN/153-220 MKI RU1A_YEAST/229-293 DVT MODU_DROME/177-246 LSV PR24_YEAST/43-111 IIV MODU_DROME/422-484 IFI PR24_YEAST/212-284 ISV SSB1_YEAST/39-114 IHI PTB_HUMAN/61-128 IYI RN12_YEAST/200-267 LHI D111_ARATH/281-360 VRA U2AG_HUMAN/67-142 IHA IF39_SCHPO/41-124 FVV LA_DROME/151-225 LLR LA_HUMAN/113-182 LLI PR24_YEAST/119-190 LVT //