RNA Structural Covariation Above Phylogenetic Expectation
Current source code distribution: rscape.tar.gz
R-scape manual: R-scape_userguide.pdf
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs. E Rivas, J Clements, and SR Eddy. Nature Methods 14:45-48, 2017.
Estimating the power of sequence covariation for detecting conserved RNA structure. E Rivas, J Clements, and SR Eddy. Bioinformatics, in press, 2020.
RNA structure prediction using positive and negative evolutionary information. E. Rivas. bioRxiv preprint, 2020.