| Name | Description |
|---|---|
| HMMER3 | Sequence database homology searches with HMMER3. |
| Pfam | The Pfam database of protein family alignments and profile hidden Markov models. |
| Rfam | The Rfam database of RNA alignments, consensus secondary structure, and covariance models (profile SCFGs). |
| Dfam | The Dfam database of repetitive DNA sequence elements. |
| tRNAscan-SE | Find and annotate tRNA genes in a DNA sequence using tRNAscan-SE. |
| snoRNAdb | Database of small nucleolar RNA genes from yeast and Archaea. (Now hosted in Todd Lowe's lab at UC Santa Cruz.) |
| GtRNAdb | Database of tRNA genes in sequenced genomes. (Hosted in Todd Lowe's lab at UC Santa Cruz.) |
Questions or Comments: eddys@janelia.hhmi.org
Howard Hughes Medical Institute
